Study, Analyze, Learn, Discover

Introductory screen shot

Genome Workbench offers researchers a rich set of integrated tools for studying and analyzing genetic data. Users can explore and compare data from multiple sources including the NCBI databases or the user’s own private data.

Data analysis in Genome Workbench is supported by an advanced suite of industry standard alignment tools including BLAST, Clustal, Kalign, MAAFT among others. Learning and Discovery is accomplished along the way. When a researcher studies and analyzes results with Genome Workbench, he or she views the data in novel ways that leads to new understanding and discovery.

Users are invited to take advantage of the flexibility included via these tools to create phylogenetic trees, alignments, tabular view etc. of data to graphically display data analyses in publications and presentations.

Graphical Views, Integrated Tools, and Data Formats available in NCBI Genome Workbench:

Graphical Views Integrated Tools

Alignment views

  • Alignment Span View
  • Alignment Summary View
  • Cross Align View
  • Dot Matrix View
  • Multi-pane Cross Alignment View
  • Multiple Alignment View
  • Tree View

Sequence views

  • Feature Table view
  • Graphical Sequence view

Generic views

  • Generic Table View
  • Sequence Text View
  • Text View

Alignment Creation tools

  • BLAST
  • Clean Up Alignments
  • Common taxonomic tree for sequences
  • Create Gene Model
  • Needleman-Wunsch Alignment
  • Find Overlap between DNA sequences
  • Group Alignments
  • Merge Alignments
  • Genomic Aligner (NG Aligner)
  • ProSPLIGN
  • SPLIGN (SPliced aLIGNment)

Edit tools

  • Basic/Extended Cleanup
  • Merge Items tool
  • Search/Find Repetitive Sequences with WindowMasker

Multiple Sequence Aligners

  • Clustal Omega
  • ClustalW2
  • Kalign
  • MAFFT
  • MUSCLE

Tree Building tools

  • Phylogenetic Tree Builder
Data Formats
NCBI ASN1, AGP, BAM, BED, CSRA, FASTA, GFF, GVF, NEWICK, NEXUS, REPEAT MASKER, TABLE, TEXT ALIGNMENT, VCF, WIGGLE, 5 COLUMN FEATURE
Sequence Editing Package
Genome Workbench offers a Sequence Editing Package that allows users to create, edit, validate, and submit a genome sequence submission to GenBank. The package includes a pop-up, tabbed wizard that directs a submitter through the data input steps needed to create a submission and a menu of editing and reports tools that can be used on an existing submission. Start with waqtching the Introducing the Genome Submission Wizard video tutorial.

Genome Workbench is a free open-source software under the terms of the United States Copyright Act. This software/database is freely available to the public for use. The National Library of Medicine and the U.S. Government have not placed any restriction on its use or reproduction.

Complete sources, build instructions and scripts are located at: https://ftp.ncbi.nlm.nih.gov/toolbox/gbench/

NCBI Genome WorkBench uses third party tools and libraries.

NCBI Genome Workbench Privacy information.

Contact us.

Support Center

Last updated: 2019-09-12T14:57:19Z

亚洲竞博杯